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(22)
cellxgene_census
(7)
openproblems_neurips2021
(2)
openproblems_v1
(10)
openproblems_v1_multimodal
(3)
1k PBMCs
1k peripheral blood mononuclear cells from a healthy donor
openproblems_v1
openproblems_
v1/tenx_
1k_
pbmc
10x Genomics (2018)
45.29 MiB
02-02-2024
1087 × 15099
5k PBMCs
5k peripheral blood mononuclear cells from a healthy donor
openproblems_v1
openproblems_
v1/tenx_
5k_
pbmc
10x Genomics (2019)
156.82 MiB
02-02-2024
5247 × 20822
CITE-Seq CBMC
CITE-seq profiles of 8k Cord Blood Mononuclear Cells
openproblems_v1_multimodal
openproblems_
v1_
multimodal/citeseq_
cbmc
Stoeckius et al. (2017)
191.3 MiB
02-02-2024
8617 × 36280
CeNGEN
Complete Gene Expression Map of an Entire Nervous System
openproblems_v1
openproblems_
v1/cengen
Hammarlund et al. (2018)
778.17 MiB
02-02-2024
100955 × 22469
Diabetic Kidney Disease
Multimodal single cell sequencing implicates chromatin accessibility and genetic background in diabetic kidney disease progression
cellxgene_census
cellxgene_
census/dkd
Wilson et al. (2022)
1.28 GiB
02-02-2024
39176 × 27980
GTEX v9
Single-nucleus cross-tissue molecular reference maps to decipher disease gene function
cellxgene_census
cellxgene_
census/gtex_
v9
Eraslan et al. (2022)
2.99 GiB
02-02-2024
209126 × 28094
Human Lung Cell Atlas
An integrated cell atlas of the human lung in health and disease (core)
cellxgene_census
cellxgene_
census/hcla
Sikkema et al. (2023)
17.35 GiB
02-02-2024
584944 × 28024
Human immune
Human immune cells dataset from the scIB benchmarks
openproblems_v1
openproblems_
v1/immune_
cells
Luecken et al. (2021)
1.18 GiB
02-02-2024
33506 × 12303
Human pancreas
Human pancreas cells dataset from the scIB benchmarks
openproblems_v1
openproblems_
v1/pancreas
Luecken et al. (2021)
1.26 GiB
02-02-2024
16382 × 18771
HypoMap
A unified single cell gene expression atlas of the murine hypothalamus
cellxgene_census
cellxgene_
census/hypomap
Steuernagel et al. (2022)
12.58 GiB
02-02-2024
384925 × 41642
Immune Cell Atlas
Cross-tissue immune cell analysis reveals tissue-specific features in humans
cellxgene_census
cellxgene_
census/immune_
cell_
atlas
Domínguez Conde et al. (2022)
9.7 GiB
02-02-2024
329762 × 29335
Mouse Brain Atlas
Adult mouse primary visual cortex
openproblems_v1
openproblems_
v1/allen_
brain_
atlas
Tasic et al. (2016)
1.91 GiB
02-02-2024
14249 × 34617
Mouse HSPC
Haematopoeitic stem and progenitor cells from mouse bone marrow
openproblems_v1
openproblems_
v1/mouse_
hspc_
nestorowa2016
Nestorowa et al. (2016)
377.81 MiB
02-02-2024
1920 × 43258
Mouse Pancreatic Islet Atlas
Mouse pancreatic islet scRNA-seq atlas across sexes, ages, and stress conditions including diabetes
cellxgene_census
cellxgene_
census/mouse_
pancreas_
atlas
Hrovatin et al. (2023)
13.07 GiB
02-02-2024
301796 × 24923
Mouse myeloid
Myeloid lineage differentiation from mouse blood
openproblems_v1
openproblems_
v1/mouse_
blood_
olsson_
labelled
Olsson et al. (2016)
117.4 MiB
02-02-2024
660 × 116918
OpenProblems NeurIPS2021 CITE-Seq
Single-cell CITE-Seq (GEX+ADT) data collected from bone marrow mononuclear cells of 12 healthy human donors.
openproblems_neurips2021
openproblems_
neurips2021/bmmc_
cite
Luecken et al. (2021)
2.2 GiB
14-02-2024
90261 × 13953
OpenProblems NeurIPS2021 Multiome
Single-cell Multiome (GEX+ATAC) data collected from bone marrow mononuclear cells of 12 healthy human donors.
openproblems_neurips2021
openproblems_
neurips2021/bmmc_
multiome
Luecken et al. (2021)
7.78 GiB
14-02-2024
69249 × 13431
Tabula Sapiens
A multiple-organ, single-cell transcriptomic atlas of humans
cellxgene_census
cellxgene_
census/tabula_
sapiens
Jones et al. (2022)
19.17 GiB
02-02-2024
483152 × 55904
Triple-Negative Breast Cancer
1535 cells from six fresh triple-negative breast cancer tumors.
openproblems_v1
openproblems_
v1/tnbc_
wu2021
Wu et al. (2021)
1.18 GiB
02-02-2024
42512 × 28200
Zebrafish embryonic cells
Single-cell mRNA sequencing of zebrafish embryonic cells.
openproblems_v1
openproblems_
v1/zebrafish
Wagner et al. (2018)
777.92 MiB
02-02-2024
26022 × 25258
sci-CAR Cell Lines
sci-CAR profiles of 5k cell line cells (HEK293T, NIH/3T3, A549) across three treatment conditions (DEX 0h, 1h and 3h)
openproblems_v1_multimodal
openproblems_
v1_
multimodal/scicar_
cell_
lines
Cao et al. (2018)
205.41 MiB
02-02-2024
4739 × 60550
sci-CAR Mouse Kidney
sci-CAR profiles of 11k mouse kidney cells
openproblems_v1_multimodal
openproblems_
v1_
multimodal/scicar_
mouse_
kidney
Cao et al. (2018)
423 MiB
02-02-2024
11296 × 29013
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